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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031455 Open in IMG/M |
| Scaffold ID | Ga0307505_10000143 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 89252 |
| Total Scaffold Genes | 168 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 147 (87.50%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Washington | |||||||
| Coordinates | Lat. (o) | 48.4473 | Long. (o) | -122.323 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F034408 | Metagenome / Metatranscriptome | 175 | Y |
| F056282 | Metagenome | 137 | Y |
| F061612 | Metagenome / Metatranscriptome | 131 | Y |
| F091541 | Metagenome / Metatranscriptome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307505_1000014352 | F056282 | GGAG | MIDKPVEGVVTDARPHPAGAKGAKISLNEVAERAWKARMSPRVRAWTTQELAKANASTADRRKKVECILAAYREKVPYVQDPVMGEFMATPDQVLCLDEGGLCIVGSDCDEATITMLAAIMSIGIPGMVIGSSHKTPVNVPTHVFGAFQNEAGKWIKFDGTTKHPVGKAPPTLREWWVEPGKKAKQTGEGDFVGMAGSGTLSGASKLPSTFDLRYPGIR |
| Ga0307505_1000014354 | F091541 | AGGAG | MATNKVVSRMAGQKKYTFQREKRRVPFGRGLTVEQAQSGLGGHEGGALGAADKCIRCSFGNIPVIEEVVWTIPLPLTSSEAISVFGETVNLLSGSSSVPGVASIDSTFLINGILQTDIFAQGIGVHVFCEPMSFSTIGNAFAAPAQDVATPPSPDVFTSNDIANGALGTTVTTETFGPAVFEFGNPTWRAGWNFINAYMFLWKTNQRELVMNELAADVSYFGSFADAAAAGTSEVAIIEFVAAVNAAYRSKGSATIFLPVSFRRVGSVTTDGPGSGVGNGNRGLFHPTRDFDLAPVTWGGLRWQGYGCRGQMFRPIESPCFIERGIPIGMLFQSQDAVHQALMLEALTIDNDPFGTNVSPDENLLVTTATGTAVMLEQTLDATPAYAPQVVNVSRQTFKGGILKIGIKIKGWELPGGWKAWCSENILNMVGPEAAVRN |
| Ga0307505_1000014355 | F034408 | GAGG | MYAPKIAYGMIVGVPRVPFVNEIPIQFSSSAVNASPIVQSFQNNISQDTLIERVSFGISQPNTFPGSPFQSTYFNQLKQSGQTGIGIQMQVFGGPKYAINDTYTDLGQLLDVFAMTWPNGWPLAKQSNVSVSAVLLQTPVSVPVDVTLTFLGWQNLDKALDDLSADECRNRLKAFGIEVPNLGDVNL |
| Ga0307505_1000014367 | F061612 | GGAG | MERRKIHEETLQCGYRKCCPTVKIFDDGSMELSDDDPEIGSVGTIKLWPEVVQRLLELAK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |