NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307513_10395069

Scaffold Ga0307513_10395069


Overview

Basic Information
Taxon OID3300031456 Open in IMG/M
Scaffold IDGa0307513_10395069 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1118
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)45.9233Long. (o)-120.701Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000814Metagenome880Y
F016902Metagenome243Y

Sequences

Protein IDFamilyRBSSequence
Ga0307513_103950691F000814AGTAGLKISTSAVELGFEDDFWDNRDSVFIKGLSVRSSLFAQKMSASAVELRFLDYFLGPGVLVF
Ga0307513_103950692F016902GGAGGLYNRDSVFIKGLSVSCSLFAQKMSASAVELGFLDYFLGPGVLVFVNGF
Ga0307513_103950693F000814AGTAGLKISTSAVELGFEDDFWDTRDSVFIKGLSVRSSLFAQKMSASAVELGFLDNFLGPGVLVFVNGF
Ga0307513_103950694F000814AGTAGLKISTSAVELGFEDDFWDNRHLVFIKGLSVRSSLFAQKMSASAVELGFLDYFLGLGVLGFVNGF
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