NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307513_10662296

Scaffold Ga0307513_10662296


Overview

Basic Information
Taxon OID3300031456 Open in IMG/M
Scaffold IDGa0307513_10662296 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)750
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)45.9233Long. (o)-120.701Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006830Metagenome363Y
F034007Metagenome175Y
F056276Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0307513_106622962F056276N/AMRIGEEIQRREKEQRIAQIYTDISYYGKLKEPTEVTEYRYPSFDRDERLAKQESHQKETQ
Ga0307513_106622963F006830N/AMDTTLEKLKKYFPALPQNAITKIYRARCARLRLLMNHGIPEDISLAD
Ga0307513_106622964F034007N/AMPGTGKSTFAKKRCAKRLKVCHRCARWTCNATCHSLGMVFINREDKIQFIKDGLSKGSLDNLLLTLETHPSGDVHRAIHDLWPQ
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