NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1000102

Scaffold Ga0272432_1000102


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1000102 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)183581
Total Scaffold Genes203 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)126 (62.07%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012415Metagenome280Y
F021684Metagenome217Y
F048683Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_100010231F012415GAGVRDNLRKMAPRPPLPVVQVHGEGVSPKGCEFEPPSAHTLYTCGSVAGRSRVRGSVRYITHDSCAISVVPPFNRHHTFSHSYRGLYI
Ga0272432_100010233F048683N/AMSNIELNLFLIEIVKKKEILIKIKNELLHLKNKVKNTLNHAVYKDKLYYL
Ga0272432_100010260F048683N/AMNIYFMSNMRLNLFSIEMIKKKKILIKIKNELLCLKNKVESTLNHTVHEDKLYYL
Ga0272432_100010279F012415N/AMLLEWCHLLTGYEPGLVRDNLRKVVPRPPLLVVQVHGEGVSPKGHKFEPPSARTLYTCGSVAGRSQVRGSVRYITHDSYAIRVVPPFNNI
Ga0272432_100010282F021684N/AMYDKYSKTIIEVLKQDEVYIIKYIAKSLNEFALIFTVYTSHSEIIFSAAASNISLYI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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