Basic Information | |
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Taxon OID | 3300031470 Open in IMG/M |
Scaffold ID | Ga0272432_1000119 Open in IMG/M |
Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 168788 |
Total Scaffold Genes | 195 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 109 (55.90%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Victoria Land | |||||||
Coordinates | Lat. (o) | -77.9 | Long. (o) | 160.7 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F012415 | Metagenome | 280 | Y |
F048683 | Metagenome | 147 | Y |
F059495 | Metagenome | 133 | Y |
F094619 | Metagenome | 105 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0272432_1000119178 | F012415 | N/A | MIAMLLVWCHLLTGYEPRLVCDNLCKIAPRPPLPVVQVHGERVSPKGHKFKLLSAHTLYTCGLVAGRLRVRGSVKYITHDSYAISVVPSFNSLL |
Ga0272432_1000119182 | F094619 | GAG | LFKLTVVNFDHNTLKLFSYIEISVNKISHSDISVLIKKVKTFLCIEISKRRQKNNDINFNKLMIKILRVLLTLTAFTINDENNEHSVKTDISTSLTYTEAVRDSI |
Ga0272432_1000119185 | F059495 | N/A | MIFKDEKFLNNDFIDKFVLNDLIDDNEDDEKNVEFISDEESSKKNNK |
Ga0272432_10001195 | F048683 | N/A | MSNMRLNLFSIEMAETKEILIKIKNRLLCLKNKVESILSHTVCKDKLYYL |
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