NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1000119

Scaffold Ga0272432_1000119


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1000119 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)168788
Total Scaffold Genes195 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)109 (55.90%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012415Metagenome280Y
F048683Metagenome147Y
F059495Metagenome133Y
F094619Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_1000119178F012415N/AMIAMLLVWCHLLTGYEPRLVCDNLCKIAPRPPLPVVQVHGERVSPKGHKFKLLSAHTLYTCGLVAGRLRVRGSVKYITHDSYAISVVPSFNSLL
Ga0272432_1000119182F094619GAGLFKLTVVNFDHNTLKLFSYIEISVNKISHSDISVLIKKVKTFLCIEISKRRQKNNDINFNKLMIKILRVLLTLTAFTINDENNEHSVKTDISTSLTYTEAVRDSI
Ga0272432_1000119185F059495N/AMIFKDEKFLNNDFIDKFVLNDLIDDNEDDEKNVEFISDEESSKKNNK
Ga0272432_10001195F048683N/AMSNMRLNLFSIEMAETKEILIKIKNRLLCLKNKVESILSHTVCKDKLYYL
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