NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1000226

Scaffold Ga0272432_1000226


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1000226 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)111152
Total Scaffold Genes111 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (52.25%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034416Metagenome174Y
F048683Metagenome147Y
F048684Metagenome147Y
F059495Metagenome133Y
F096304Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_100022610F096304N/AMIHIKKTLRHSITKTVLGKEKTAAAERTFRKTFKREKTDVDEKKKENNAADIEEDTEAFKSAHY
Ga0272432_1000226104F048683N/AMSNIGLNFFSIETVKKKEISVKIKNELLCLKNKVKNTLDHIVYKDKLYYL
Ga0272432_100022612F059495AGAAGVIKDADEACVMMSEDEKFLNDDFINKFVLDDLIDDSEDNEKNVESISDEESSKKNSK
Ga0272432_10002262F034416GAGMLIKYYNMFILAAEVIKRIEEKSILIMIINNDEKDSSADKLNSTVTKLYIKLLLDHYFSDNDLYDDNDYKNNINFRLYNYD
Ga0272432_100022635F048683N/AMNVYLILNIELNFFLIEIVKKKKILIKIKNELLCLKNKVKNMLDYTVYKDKLYYL
Ga0272432_10002266F096304GAGLSYYVIIYIKKTSRCSATKTVSDKEKTAAAERIFRKTFKKERIDVDEKRKKNNAADTEEDTEVFKLAHC
Ga0272432_10002268F048684N/AMFNFTELLSYKDKIYILFDEAVKNELIKLHYDNVLTKHYKVNKIINLLFKKNY
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