Basic Information | |
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Taxon OID | 3300031470 Open in IMG/M |
Scaffold ID | Ga0272432_1000333 Open in IMG/M |
Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 87509 |
Total Scaffold Genes | 88 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (22.73%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Victoria Land | |||||||
Coordinates | Lat. (o) | -77.9 | Long. (o) | 160.7 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F012415 | Metagenome | 280 | Y |
F021684 | Metagenome | 217 | Y |
F034416 | Metagenome | 174 | Y |
F048683 | Metagenome | 147 | Y |
F054461 | Metagenome | 139 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0272432_100033319 | F021684 | N/A | MYNKHNKTIIEALKQDRVYIIKYIVKSFNEFALIFIVYTSYSEIIFFVTASDTNLCV |
Ga0272432_100033327 | F034416 | N/A | MLIKYHDMFTLAAEVIKIIKERSALTMIVNNNEKDSSVDELNSTVTKLCIELLSDHYFSDNDLYNDNDYENNINFRLCDHN |
Ga0272432_100033336 | F054461 | N/A | MNTHAILCCLVKSLNCVVYEHILIKRVTEKVKRMLTAVNVNRVFTQSLMLILFYFIKTVKTLFLNTFT |
Ga0272432_100033339 | F054461 | N/A | MNIHTILYYLVKSLNYVVYKHVLIERVTEEVKRMLTVVNVNRVFTQSLILVLLCFIEAAKTLLLNII |
Ga0272432_100033355 | F048683 | N/A | MPDMRLNLFSIEMIKKKEISIKIKDELLHLKNKVESMLDHIVYKDKLYYL |
Ga0272432_100033388 | F012415 | N/A | MLLVWCHLLTGYEPGLVRDNLRKTAPRPPLPVVQVHGEGVSPKGREFELLSARTLYTCGSVAGRSRVRGSVRYITHDSCAISVVPPFNRL |
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