NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1000333

Scaffold Ga0272432_1000333


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1000333 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)87509
Total Scaffold Genes88 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (22.73%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012415Metagenome280Y
F021684Metagenome217Y
F034416Metagenome174Y
F048683Metagenome147Y
F054461Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_100033319F021684N/AMYNKHNKTIIEALKQDRVYIIKYIVKSFNEFALIFIVYTSYSEIIFFVTASDTNLCV
Ga0272432_100033327F034416N/AMLIKYHDMFTLAAEVIKIIKERSALTMIVNNNEKDSSVDELNSTVTKLCIELLSDHYFSDNDLYNDNDYENNINFRLCDHN
Ga0272432_100033336F054461N/AMNTHAILCCLVKSLNCVVYEHILIKRVTEKVKRMLTAVNVNRVFTQSLMLILFYFIKTVKTLFLNTFT
Ga0272432_100033339F054461N/AMNIHTILYYLVKSLNYVVYKHVLIERVTEEVKRMLTVVNVNRVFTQSLILVLLCFIEAAKTLLLNII
Ga0272432_100033355F048683N/AMPDMRLNLFSIEMIKKKEISIKIKDELLHLKNKVESMLDHIVYKDKLYYL
Ga0272432_100033388F012415N/AMLLVWCHLLTGYEPGLVRDNLRKTAPRPPLPVVQVHGEGVSPKGREFELLSARTLYTCGSVAGRSRVRGSVRYITHDSCAISVVPPFNRL
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