NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1001471

Scaffold Ga0272432_1001471


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1001471 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31455
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (25.64%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017941Metagenome237Y
F028667Metagenome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_100147135F017941N/AMKIVDLKKNISESIYKQILETNEIDKNCMLLREAIARDETQYEDIKLKNCXT
Ga0272432_100147137F028667N/AMIRNNLLRSFRKFARNSLNYFHQNTHSNLLKFIKSITQSYHNQIYLSIFISFTMTCDSESVESXTAHLFKSIASKRVFLISFDASVKSQNVAISXNINMSQQLRQXTIDQSDEIIKMLIELRDQQNMTLKLNEQXIDLQVDHIKRLDELEINQMTINTQKETVIELXKKVLSLKKKQRSANYSRSRQSTKSQASIENHTQXKSFTLFDNDHHKFFKFSNSFIFIDEDKSTXDSXRIKINDKLQTNVNHFDNENICIIYVISRLEDDAAEHIFAQCXHDASHSYILINELFEHLKEIYDELNKNRKCCRKYNALRQADKSFNVFYFNFMKLFSYLKYDYHTLMNNLQNKINNRLQNALSICSKNFTSLTRLRIFLQDVNSKQQVNYQLRSECYTVIIKVTVVPDKRATFLSVTTLIIDYVKSTIFSISESVRSSIICYICKTLDHLFKNCSQLNKIDTSASCAFISYLHEIIILKNKENEKMSFKNSETKN
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