NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1011796

Scaffold Ga0272432_1011796


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1011796 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7517
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021026Metagenome220Y
F094625Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_10117963F094625N/AMKSSHNLLINDERAVKQFAQSVIENSVEIFRVMRELQNQVRQHDVIISSSFIIFSSSIYIELNSQSLAAITQIIAQILNNQSFLVIHLSANSVIVFITSRFKKLLNIFKYERDKNQLNAXEQSLIQRMNMNNNHYLFHRVKIIYVESRLIIDKKIHNLMNQYXVNDLCIIFVFAD
Ga0272432_10117964F001951N/AMKLKFIDSSRNKREKDENTIKTTVTEMMIFELKKLLVDTEMFLTLTNEMMMKMKRD
Ga0272432_10117965F021026N/AMIVFCILRQAQSRVLAFALIDSEVSAYVFMNKFFTQQHHLLLHQLTHSCRLQEFDDQVALIDDIIHVVEITMIFDEHIEKLFFYVIELSQYLIIMSLSXLHHHVIDVNFEHNILILFFFFCLNHCYSFLIKIYDLNQQEENFSFEVNKVAFFQSRSQFIHKK
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