NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1012879

Scaffold Ga0272432_1012879


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1012879 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7068
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104134Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_10128791F104134N/ASDEXVFSLSVIFLSQTILRTFRCLXSLTLFFISLSMIFFXLLMSIVVRISCASTAKIRRATRVELVISFAHIXVFFRFAQASELTAXRKMSSLFSLRSDMIRFLXSVNTLAILCRICSIDFFCISFISLLFTILIMTSHFLQSDDRSSLKQCSFIVVSSLVTFAHDVIFVERRMLFCVCNCLLSSXTDVFSFCTFFAMNAFXFAXCFSSESSRRCXISFNAISFHEXSLLFYFSNVDIFISRSIMLATFSSSLHEHFDLASLFSCDKSTSLAIIFESALLRFVQFIIVQSSS
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