NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0314816_1034785

Scaffold Ga0314816_1034785


Overview

Basic Information
Taxon OID3300031481 Open in IMG/M
Scaffold IDGa0314816_1034785 Open in IMG/M
Source Dataset NameMetatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_N_R1 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)652
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Surface Biofilm Microbial Communities From Soil Inoculated With Nitrogen-fixing Consortium Dg1, State College, Pennsylvania, United States

Source Dataset Sampling Location
Location NameUSA: Pennsylvania
CoordinatesLat. (o)40.7997Long. (o)-77.8629Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019840Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0314816_10347851F019840AGGAGGMKQLRVLLSSSVLLAAVATGAQAQVSITPLIGGYVPASDMNQVQGSATNLAKTRDGTLSLGANIDFGMLRGSVAYASGTTIKNADSQKIGKGNVLAAAADLVVRPLPRILVQPYVLAGAGQKFYKYSDSPTLVAGNDRDFAWHGGIGADLMLGQMGIAAELTDYLSKGADDKWNVHDAFLMVGLKFRVGQ
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