NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307509_10008771

Scaffold Ga0307509_10008771


Overview

Basic Information
Taxon OID3300031507 Open in IMG/M
Scaffold IDGa0307509_10008771 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12784
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.0356Long. (o)-122.86Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000433Metagenome1147Y
F030302Metagenome185Y
F060474Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0307509_1000877111F030302N/AMPSTGKNIFAKKCCAKQLKVCHRCARWTCNTQCRSLGMVSINHEDKIQFIKDGLSKGSLDNLLLTLETHPSGDVHHAIHDLSPQFHKEHARHSLGNLTKKDHVC
Ga0307509_100087712F000433N/AMVFQFEFYQHLFSKLSPLFVLTISVVKLINQSFDLCDRPVFKMNIYHKLKVSYIIRLVIIKHALDKELLILQVQSDDIKP
Ga0307509_100087715F060474GGAMYNLREDHDLQAKFASLARKVEALEFKKSGQLKSVQDIMCQICETNEHSTNDCPTLLSFK
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