NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307509_10016528

Scaffold Ga0307509_10016528


Overview

Basic Information
Taxon OID3300031507 Open in IMG/M
Scaffold IDGa0307509_10016528 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8534
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.0356Long. (o)-122.86Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055313Metagenome138Y
F061393Metagenome131Y
F069507Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0307509_1001652814F055313GAGMAVLLIVDCVLVRVTIGREARQGSEEVLKGGDVDHRIKYGERSSNV
Ga0307509_1001652815F061393AGGVSKPKGRETRKDKLNQVQKGGLDIAKREVGGPWVFAYFGTDVDRGKGTVGVDMDGVIGIGTKGCDEEWGCGSVKVLGLGNVVEEPAVDKFLR
Ga0307509_100165282F055313GAGMTTLLVVDRVLVRVAVGREARQGGEEVFEGADVDCRVKYRDRERSG
Ga0307509_100165283F069507GAGMVDQVTCELKVAPTVLVEWGKEGVKLSLGKADDMSGGFFSELFKIKLGGGVKCFLSGLGSRW
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