NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307509_10021617

Scaffold Ga0307509_10021617


Overview

Basic Information
Taxon OID3300031507 Open in IMG/M
Scaffold IDGa0307509_10021617 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7271
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.0356Long. (o)-122.86Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016489Metagenome246Y
F044236Metagenome154Y
F059500Metagenome133Y
F075486Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0307509_100216173F059500AGGGGGMSVDFDHLASSTAFDVFSYEDFHSGPPVIGCNELEGFGNSGVSSGFVVMKKGCYSPPKVVVCHDNKCCSMVPVSAVH
Ga0307509_100216174F044236N/AMKTDAFEQSVSVIVRMVSYPPDKGNLVMKSMATVSKGQVFSVGVIGNIGG
Ga0307509_100216175F075486GAGGMPVVLLSATEYAKVLFKGLVSAFAGSICLRVISCTDVLVNVQDAA
Ga0307509_100216176F016489N/ALGSSLILYTTFDIWETTSKGPYLLGDNLGVMLLGSCRFVPSNQTLDLMGNGEWHGHSLIQDSCALCCASWAAFLASSMDESRCSRDGMSVFLVG
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