NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307509_10083344

Scaffold Ga0307509_10083344


Overview

Basic Information
Taxon OID3300031507 Open in IMG/M
Scaffold IDGa0307509_10083344 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3296
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.0356Long. (o)-122.86Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016489Metagenome246Y
F016903Metagenome243Y
F029295Metagenome188Y
F044236Metagenome154Y
F059500Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0307509_100833441F016903N/AMSPEEQLTSPDSPKHSALSTPSSFGLNDLYQTPVQTIVEIEDESMEEGEITNSDLSIEEGQIADTRQSTPDSMDIGIPCVPSDWLQPDSP
Ga0307509_1008334410F059500AGGGGGMSVDFSHLASSAAFDVFSYKDFHSGPPVVGCDKLEGFGNSGMSSSFVVVKKGCYSPPKVIVCHD
Ga0307509_100833446F029295N/AMRIIPSSVPRVKMVEVANPELGSSWWIEDMVVGDREGRPRFQGFLYCLVDFQSPLVDPKRGDPRS
Ga0307509_100833447F016489AGGGGGLILYVTLDIWETTLKGPYLLGDSLGVMLLGSRKFVPSSQTLDFTGNGEWCGHSLIQDSCTLRCASWAAFLASSIAESHCSRDGISVLLVGWCICGV
Ga0307509_100833449F044236N/AMKTDAFEQSVSVIVRMVSYPPESGSLVMKSIVTVSKGRAFSVGVIGNIGG
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