NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307509_10099360

Scaffold Ga0307509_10099360


Overview

Basic Information
Taxon OID3300031507 Open in IMG/M
Scaffold IDGa0307509_10099360 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2952
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.0356Long. (o)-122.86Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055313Metagenome138Y
F057784Metagenome135Y
F061393Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0307509_100993603F055313N/AVAVLFVVDRVLMRMVVGREARWGGKEVLEGGDVDCRIEYRERSRSG
Ga0307509_100993604F061393GAGGVSKPKGREVRENKLNQVQEGGLDVTEREVGGPQVLAYFGTDVDRGKGTVRVDVGGVVGIGTEGGDEVRGCSGVKVLGPGDVTKELAVDEFL
Ga0307509_100993606F057784AGGAVPEEGFVVEQGDLSGWGLVEVMSARELPICSATSCCVKDVNKLVINVMVETLSAEKTTKGEDV
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