NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307509_10102294

Scaffold Ga0307509_10102294


Overview

Basic Information
Taxon OID3300031507 Open in IMG/M
Scaffold IDGa0307509_10102294 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2897
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.0356Long. (o)-122.86Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016489Metagenome246Y
F044236Metagenome154Y
F059500Metagenome133Y
F075486Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0307509_101022941F059500AGGGGGMSVDFSHLASSAAFDVLSYKDFHSRPPVVGCDKLEGFGNSSMSSGFVVMKKGCYSPPKVIVCHDNKCRSMVPVSAIQ
Ga0307509_101022942F044236GGAMDAFEQSISVIVRIVSYPPDRGNLVMKSIATVSKGRVFSVGVIGNIGG
Ga0307509_101022943F075486GAGGMPVVLLSTTEYVKVLFKSLVSSFTGSVCLRVIGCADVLADVQDAA
Ga0307509_101022944F016489N/AVSRDTWKTSWIFQVGGNLILYATLDTWETTLKGLYLLGDNLGVMLLGSRRFVPSNQTLDLTGNGEWCGCSLIQDSCALHCASWAAFLASLIAESHCSRDGMSVFLVG
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