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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031512 Open in IMG/M |
| Scaffold ID | Ga0308397_1000452 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20051001_T8 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29295 |
| Total Scaffold Genes | 38 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (94.74%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5387 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002970 | Metagenome / Metatranscriptome | 517 | N |
| F005302 | Metagenome / Metatranscriptome | 405 | Y |
| F012577 | Metagenome / Metatranscriptome | 279 | Y |
| F019420 | Metagenome / Metatranscriptome | 229 | Y |
| F048124 | Metagenome / Metatranscriptome | 148 | Y |
| F069791 | Metagenome / Metatranscriptome | 123 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308397_100045213 | F012577 | AGGAGG | MLVAIAEPHQQFPVPLTVADYEFSTSDDGDERGRVTLPPGYARSGVMTQIGDELIVYCTQLSRTVWRGQIERIEEARDGSITWYALGFGALQRDARISVAQNMGDMTRWKPVGSGFMPSSGYDSRGDLWEYEIVTIGGSLFARIRTKRTFTISNTMLFFLAYLYNQPERYVTITANERINVLITTLSGLATGVWVAPVTNIPSPNTYTLTLGTFTGIGSSGVVTAGNCFGWVVGVRANTGSETTAGATSVAFRATINDADGVGINDALLSIALIGRGGCCGVYLPPQTNVTLEKPDANLREIVEQSAVASLRYHRKRFLRDRPLTVIDFRTDSTLTWRFPETMRVIDISKAPNRVYAQYRGYWTDHLTATTSILSLEYRRQQLAWRVGSVGEYGSKTIAEERRDEAAVALDRQIAPLTVELDNSRYELMTREGVTVPNWAADVSDYAIVPGYYRNAKITSRTITRERTTYTVSFNPDDFVTVLR |
| Ga0308397_100045222 | F019420 | AGGA | MYRDVIFWSGATDGDCEATVVRARLLGMTIDLGDDDERPDKMTAFYEADGGGIIVYEVECWEADGRMTARWRRVASLEEVRRAYLERLDL |
| Ga0308397_100045235 | F048124 | AGGA | MATISIWRGYRHWNWDEENDYETVTYEDAEEIGEVRFENEKADIQYRIIQWDEGIVIFYVKREGHYCEAEIFEYPDLEAAAKDYAFILRKAGVIQ |
| Ga0308397_100045238 | F069791 | AGGA | MPSSELAHFLNVALDIQAPPFSGIHVADGVILATDGVMLVAKKFDVVFMRGEGAISPKAAKVLEALAEATWIGSVAVVGNRVTATARSTRYEENVGEVAGEYCEVKLPEFYCPRVPIVRMLAVLTDESRGWVQIVENPRIKNVKEWSVKE |
| Ga0308397_10004527 | F002970 | GGAG | MSYSSVIDIIELLAGLAVQYNSAVVPVRRLTTQPNWSDAAQLPVRIIPTLGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTAAALVDYIEDYVAQLRFAWLARGDVQLVNVSGIVDVVRYGERAYEGVAMTTRFAHLVRAPSS |
| Ga0308397_10004528 | F005302 | AGGAGG | MSHSGVLAGLYAGNFAVEISTDATTWTAVSNATVKVDDVELSRPSGEAYVGGSSDYATITVGKREPVELTLTFLYNEAANSAANTIFDRFQSATPTLGVRWSPRGLVGSARAYGTSNDGGTTFGLGVITGVTLSALDPSDAEPYVAMVTVRTPSIRQYTLAASNPTNLNPAS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |