NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308412_1013555

Scaffold Ga0308412_1013555


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1013555 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3700
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000642Metagenome / Metatranscriptome965Y
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F002978Metagenome / Metatranscriptome516Y
F066811Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0308412_10135552F066811AGGAGGMQFNNPPAFTAPSMADILNAATSIFNPFVSVLALAIGVTLGARMLGRIVRLF
Ga0308412_10135554F000855GAGGMDWLEDFFGKIVGWLDQISAGVHNAIIGWINDSLIATWNGWMDSLLHPAQAMPSIPALRWVVDWLGGIVDYTRLMYMLVDYVAYAQIVQQALLAQLAIVAVGLGFRAWLVIRRVVLVS
Ga0308412_10135555F001381GAGMHYVVATLYVLLWLALAAGAALVLPIWALPAALVQLAVVYVMLRAWLTAAAGGDDGA
Ga0308412_10135556F000642AGGAGMQEISVALALCAVGAAVWYMRRRDAGAGRVRGWLLLYDAVGGWRVLAASYGDAGIVADGVTYPASLPAVRAGRELVWIARCESAALIEHQALERARESAALASLWRGGGQWIDLLRVLGVVLPAVFAYFTWAQVSSLQSLVAQILALVSK
Ga0308412_10135557F002978GAGMRDWRVTVVPWADRRLWFVQARRGRRVVWGIVYDADDPDSVALARRAIATLRAAGADCSALPAVLPGSPGAPGA
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