NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308412_1061122

Scaffold Ga0308412_1061122


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1061122 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1249
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012676Metagenome / Metatranscriptome278Y
F015735Metagenome / Metatranscriptome252Y
F090437Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0308412_10611221F012676N/AKLAARWDGSPMSLTHPEHGWIRFLEIRNIAHATYLDEPPGWRIVVEDEERFMQLVPTLQKYGIYGIHEWTYDIH
Ga0308412_10611222F015735GAGGMVVYHHWSVEWHPRDIDPPGGLPRIVCIARRAVVDPFAGPGPFPSDIDRAVRFWNLVASGGARDHGAGYEVVWRLSVVAGDVDGDAPDGAWSDDPVYRARRRLLRWIMRSQCPIPALADHFAVEHFLGRPEYFGALE
Ga0308412_10611223F090437N/AAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVEEYRADPSMGGTEG
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