NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308390_1014911

Scaffold Ga0308390_1014911


Overview

Basic Information
Taxon OID3300031514 Open in IMG/M
Scaffold IDGa0308390_1014911 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_149
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2848
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F002978Metagenome / Metatranscriptome516Y
F004024Metagenome / Metatranscriptome456N
F074921Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0308390_10149111F002372AGGGGGMPTRREDVLWQTVHRKSSHLRALLDSLDLVDVGVTYELDFYPYAIVELLRVRDDAPPIVLRSAYVQANRQWERHSEFALRIVEAALQLVHEYRVDPS
Ga0308390_10149113F002229GGAGGMVTLLTFDGVEDVDYVPSDAEVRASLDDAGLYGMVLNGVTWMRLSSGAGWWTVVCNRRVTATLAAVGWCWVADGLGRGYWSPALACIPGEVRVLCGGCVEDEDVEADDGDE
Ga0308390_10149115F004024AGGAGGMHSERDYLRQPSLNDDDMMFLDARATLAAALARAVVGYSDSRVRALAWLSIATPRLYDRIAPVIESSAIRQSPGASRTLRDALRALSLEEYVRRRDERRER
Ga0308390_10149117F002978GAGGVSVCDWRVTLKPWADRRLWFIQARCGGRVVWGVVYDAGDPDSVALARRAIATLRAAGADCSALPSPLPGSPAPGA
Ga0308390_10149118F074921N/AERARESAALASLWRGGGQWIDFLRVAGVVLPAAFAYFTWAQVASLQSLVAQILALVGER
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