NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308398_1012702

Scaffold Ga0308398_1012702


Overview

Basic Information
Taxon OID3300031516 Open in IMG/M
Scaffold IDGa0308398_1012702 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20051001_T9
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2783
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006183Metagenome / Metatranscriptome379Y
F024799Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0308398_10127021F006183N/APEKVPVTPAGKPENVAPVAPVVLYLIGVIAVSTQTVWLFVPGAEVSVMVLLGRTMMVPVAVTFPQPPVRVTV
Ga0308398_10127023F006183AGGLKVPVAVGVPEMVMVPPEKVPVTPAGKPENVAPVAPVVLYLIGVIAVFTQTVWLSVPDAEVRVMVLLGCTMMVPVDVTFPQPPVKVTV
Ga0308398_10127024F006183AGGMVMSPPEKVPVTPAGKRENVAPVAPVVLYVIGVIAVFTQTVWLSVPGAEVRVMVLLGRTMMVPVAVTFPQPPVRVTV
Ga0308398_10127028F024799AGGLKVPVTVGVPEMVMLPPEKVPVTPVGKPENVAPAPPVVLYLIGVIALFTQTVWLSVPEVSVMVVG
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Institute for Fundamental Biomedical Research
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