NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308398_1053894

Scaffold Ga0308398_1053894


Overview

Basic Information
Taxon OID3300031516 Open in IMG/M
Scaffold IDGa0308398_1053894 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20051001_T9
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)983
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000855Metagenome / Metatranscriptome859Y
F001381Metagenome / Metatranscriptome709Y
F011940Metagenome / Metatranscriptome285Y

Sequences

Protein IDFamilyRBSSequence
Ga0308398_10538941F011940N/AAVPRYTLAPVTPPPLGDDVSWDGSLVGDLLDGLEALGRAVAPPAGRICDLPAPVLADAPEYGFRDAFPDFILGLCGFLGVASPVLGFVRLPVTLTVIGFVFWSAWRVFRSLS
Ga0308398_10538942F000855GAGGMDWLEDFFSKVVSWLDERTANIYNAVVAFINVLVDVWNGWMDALLHPAQAIPSIPALRWVVDWLGDIADYTRLMYMLVDYVAYAAVVQQALAAQLTIVTIGLAFRAWLVIRRIVLVS
Ga0308398_10538943F001381GAGMHYVVATLYVLCWLALAALAALWLPRWALPAVLVQLAVAYVMLRSWLTAACGDD
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