NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308392_1002570

Scaffold Ga0308392_1002570


Overview

Basic Information
Taxon OID3300031517 Open in IMG/M
Scaffold IDGa0308392_1002570 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6825
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007404Metagenome / Metatranscriptome351Y
F012577Metagenome / Metatranscriptome279Y
F014738Metagenome / Metatranscriptome260Y
F016100Metagenome / Metatranscriptome249Y
F072382Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0308392_10025702F012577AGGAGGMLVAITRPHQQFPVPLTAADYEFSTSDDGDERGRVTLPPGYARSGVMTQIGDELIVYCTHLSRTVWRGQIERIEEARDGSLTWHALGFGALQRDARISVVQNMTDMTRWQPVGSGFMTGSGFDSRGDLWEYEFISTGGLPRVQIRTKKAFTIATATLFFLAYLYNQPERYPTIRTNESIRLSSISVSGLAQGVWVAPVTAMPTPPAYTLTLGTFTGLNAAGNVTAANCYGWVVGVQAAGVENVAGTTSAAFRATVNDPEFDAIDAAALSAALIGRGGCCDVYLPNSTNTSIEKPDANLREIIERGNFPTVRYHRKRFLRDRPRPTIDFRADSALVWRFSETTRVTDISKAPNRVYGQYRGYWTDHLTATTSITSLESRRQLARRVASVGEYDSKATAEAHRDEAAIALDRQIAPLTVELDNSRYELMIREGVTVPNWSADVSDYAIVPGYYRNAKITARVITRERTTYTVSFNPDDFVTALR
Ga0308392_10025705F007404GGAGGVDIVEIFQLLAAGHAGLTALDYVWNAVFGAIGAATAYLADKEGVVLLPRYDAEQHSIELGALGRVLVGAGAGVLVGYSGYIPFIAGVVAPTLLPALIDKITAFVERRRK
Ga0308392_10025706F014738GGAGGMKLDVLLIIGAFALAFVHPDAAQVATTAVLVLLMVRIERGRRARKKKSAPAGG
Ga0308392_10025707F072382AGGAGGMKTVYHTKDVWFPPFSIKIEPEPGTWFADVYVRYTNAPNDKYNAYIGADNFLAGTPIPAVDRRDVAKAIESLVFDYGLVDLVIYPTREGWGVNITLCPELENQYLHGTGATPADAIRNSNYPPPLRDL
Ga0308392_10025709F016100AGGAGGMIKSVKVERFKEYSELVRVVSRSEKTPATNKDIIRPLNYELLVGTHVPEPDWHRLGALVVALFRSFAVVDVEIWQADNGDWIADALVDFGGVRRLRKGEGDTPLQAVIELFYDIRRY
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