NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10001971

Scaffold Ga0307488_10001971


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10001971 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17337
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (26.83%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005287Metagenome / Metatranscriptome406Y
F007770Metagenome345Y
F016956Metagenome / Metatranscriptome243Y
F023615Metagenome / Metatranscriptome209Y
F039679Metagenome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0307488_1000197132F023615N/AMNRFELEDSMSNLHQIGEDIETIIYAIGDSPIKHTEDQLLNMLIGMKQLHDTRYQKMWNVFEQLIQNGTISNKNTEGL
Ga0307488_1000197133F016956AGAAGGMIETHETWKAPKKVQLAIIDLAITHIKKVISNPEVKTEGDNFDYWNSYDLGDGNYVDYNIYCGDDWCVLKQDGSGEYEFTDPSKWSWGVTCYAVDPPTKENKYHQIDTGRDQYLFSYNNSCGNFEVEFENE
Ga0307488_1000197134F007770N/AMSGEGLTTSFRRTAQTSKSNQQLLREFQRIIYASRVTTHMKWYGEAESVSILEHGDKELQKWEQESVAIKDTFQFYISVCESWYQDADLYESHEREDSFVSLSRKFANDNALMYFPDGFPAEWIEQEIINGEKNWNHFNVKPDDKNIDKICDAWYSYGIMKLQAFDKEVESQLWNEAKRVIKQLMENVCH
Ga0307488_1000197136F039679AGGAMSVKNSHLTIRSDLLEEDADISVPVRFLDYQEDDYVGDSATLNIDCEYSTDGEQLDDMSGYNIIVRITDSSQKDKHGSPWKDRLAFAISADFDWN
Ga0307488_100019719F005287N/AMPSKQIPKYKISSTDIVYSEHDIDECFEYKDGGGRVPDGTAIGYIEITPVLKQEYFYLFEDIKYSKYNHDYWNNYELENDPNRLILP
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