Scaffold Ga0307488_10014780

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307488_10014780

Scaffold Ga0307488_10014780

Overview

Basic Information
Taxon OID	3300031519 Open in IMG/M
Scaffold ID	Ga0307488_10014780 Open in IMG/M
Source Dataset Name	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6321
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (87.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	71.3731	Long. (^o)	-156.5049	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F060355	Metagenome / Metatranscriptome	133	Y
F065219	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307488_100147802	F060355	GGAGG	VRIKDDVLEKWESGWTIYDIAEHYCTPVENIIRMLGLVEDPFSYELH
Ga0307488_100147804	F065219	GGAGG	MIYDLQQCKNTGNWWIMQQDETGFRTIVQTLSANLTVVEAHRYMDAYISEIKNG

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