NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10021339

Scaffold Ga0307488_10021339


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10021339 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5216
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035273Metagenome172Y
F040601Metagenome161Y
F046983Metagenome150Y
F085562Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0307488_1002133910F085562GAGMDDFTKKSVEKFDKATVRAAEKLIDRSPELKKIRSIKDGLSGSEITTGVNCQQYKDGYDNIKWSKPEDKEKPKFKVRVNGVLQYPEDKDEE
Ga0307488_100213397F040601AGGAGMSNVHYIIKVIEPEKEYLKTFIEPTLDDCRREAQSYLWSKPEETQYIYVATRIKNDHTV
Ga0307488_100213398F035273AGGAMTTPFKVWDSQRKDMTQYTPKELYKVVVEYPHTNRTLEFIGMDRGSCIMQAEVAKEHDDELMLMQSEETITLLKKEKI
Ga0307488_100213399F046983N/AMKIPDNWKKESTHATLGVNTMSLVGLSLMWGHMLSMISLWFLPLTIISLLAGFGNEVRKRDA
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