NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10049222

Scaffold Ga0307488_10049222


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10049222 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3274
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008425Metagenome / Metatranscriptome333Y
F051263Metagenome / Metatranscriptome144Y
F064641Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0307488_100492225F064641N/AMETPQEDNDENAIRHYKGTVKQFKDMFDDLAGGKDTNAYNSPVRQGYDIQNTRGDVKSPHWDENHEDEKTQNENHIPTFDNWDGWHNEQSIDFSVSKS
Ga0307488_100492226F051263N/AMSITNFKSFDLNEADKHEFNPNETAERLKRREQQNIERYRAAQEREDAYGITYYKYRIAVDKIDLQKLKLMTQIHQLKQKYKK
Ga0307488_100492229F008425N/AMANKDITYKQFIAHMDKGNKVYMKKPKSWQKVWFWWESKKEKWFLNKAFEKRTVGKVITDKSSWITARQMESHLDFMERQGYKYHIDE
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