NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10051869

Scaffold Ga0307488_10051869


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10051869 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3175
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022653Metagenome / Metatranscriptome213N
F022837Metagenome / Metatranscriptome212N
F035290Metagenome / Metatranscriptome172N
F079213Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0307488_1005186910F035290AGAAGGMNIEKDHCDYYLEVYYWEHKLVNGVVTQKDKIVLSFIGLYRDFELEFEDQLTILTDLRENLMSAYMNWPDGEVAVELTIREEGVNL
Ga0307488_1005186911F022653GAGGMNIFKKLWLFVCLETKGLLSDLMTGNLTETEKENLFWLFVILWGLVMVVFFILHESTGAVFDL
Ga0307488_100518693F079213GGAMTTARLYNAAKYQQVEGKKMILELSDGQRFNVKGSREANKICNELNAKPWNF
Ga0307488_100518699F022837GAGGMSQLHLRMSFRDHEYHTMHDGELILFNLEDYQPYEPENCLHEAYLFCDIIIDDKPVDHYAITASQYDAMTATIAEGSYYEY
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