NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10069489

Scaffold Ga0307488_10069489


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10069489 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2654
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077967Metagenome / Metatranscriptome117N
F095622Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0307488_100694893F095622GGAGMLYNKNLINKAKTFLANKNVEVDFDNERTTFSICVEVNNERIWTGGEGYWSEATKGVKVEHANFLVTHEEDYGWNGGLSGCISYDGSGLDGTWYDGNDVANNTLINKIKDVESDGMIYGSTAFINNLKKYMVEKCDYDMDLQKYLDFDYSEQGMQDDELVNLDVECDADFWLHVIDTMQQQGIAFRQIESKIQYGAIVN
Ga0307488_100694898F077967AGGAGGMSDPTKTFWDDVLDVVEKDNTVDQEHISLDEIRDEELKDSNYVEGIDNWEEWN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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