Basic Information | |
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Taxon OID | 3300031519 Open in IMG/M |
Scaffold ID | Ga0307488_10099917 Open in IMG/M |
Source Dataset Name | Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2118 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Alaska | |||||||
Coordinates | Lat. (o) | 71.3731 | Long. (o) | -156.5049 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000379 | Metagenome / Metatranscriptome | 1211 | Y |
F008154 | Metagenome | 338 | Y |
F041486 | Metagenome / Metatranscriptome | 160 | Y |
F096209 | Metagenome / Metatranscriptome | 105 | N |
Protein ID | Family | RBS | Sequence |
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Ga0307488_100999172 | F008154 | GGAGG | MNKDKEEKDLNDCYQEFFRTVIDMQARYNNQVIAGTMMAQALRLYKTNLTEEGFRSMVQTIADSGDNIQPFDVPTVN |
Ga0307488_100999173 | F041486 | GGA | MIISTIFGFFLTIVGVNETAVAGYKILNTANNINEKKEQNQLKASLHEEAQQILKDAIREAGE |
Ga0307488_100999175 | F096209 | GGAG | MTVAIQTKSVQEIFEDMTESYSLGEYLDGHTNYGEDALMTPDKFADRFQHICFGFGYREAEIIPQKHEIKEWCQEYLDKLESRFR |
Ga0307488_100999176 | F000379 | AGGAG | MKIDYENKHGMMVGYIDGSQNVSAVQTGWDIKPEALSKLLLDKYPTKADAMTVVDSPLLVPVFKKDDYCYVDEFGDVIESNLSWNKEVMRKDIGHLFLFMKGTWQYSDNGIDWEPAKEAFVDTSGVAIESIREVLEMEKA |
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