NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10117245

Scaffold Ga0307488_10117245


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10117245 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1913
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014790Metagenome / Metatranscriptome260Y
F037814Metagenome / Metatranscriptome167N
F071648Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0307488_101172452F071648AGGAGGVRRTFACTVCGKRFVHNKPETLVGKLGIIPVNLCKTHFKAVMKQDELLLNDHRKVA
Ga0307488_101172456F037814AGGAGGMEPTLAISIAMLLVIMFGCLYMLKVLGECKKIIKSMKRTSKKYMKEVVSND
Ga0307488_101172457F014790AGGAGMQKEISNKIEKFAKLTGLTERVTMSHGTLYAFLLQPERCDFFHGVVRTFYKDNINPEGGVDMHPVGDEFAFDFTEGPKDNFHAENGVWSEFAEEELLNNIDEEDESPAFPSYNEIPDEVDVMLNLEADAKEGK
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