NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10134699

Scaffold Ga0307488_10134699


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10134699 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1750
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030251Metagenome186N
F092744Metagenome107N
F105929Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0307488_101346991F105929AGGAMTTFTGYIARETEKAYGILINLTDEKLAWIPKKKIEKETRAELAAVVVMAGETIQRKVWLTDLEIDTEWFNKV
Ga0307488_101346992F092744AGGAGGMATITTLETFTAKNHPTISVELSKLTKRKSANVYIVSFLDAMHNQEVTLGRYRSLTEAKEGFDLHKKAAQWGELYA
Ga0307488_101346994F030251GGGGGMLSTDSFPPVRMATFPAQQREISMVKRTPFIGTPLWIIFERDGEPEPQEIARFRDFYLANDCFDTLVEEAKNEG
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Institute for Fundamental Biomedical Research
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