NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272428_1002112

Scaffold Ga0272428_1002112


Overview

Basic Information
Taxon OID3300031520 Open in IMG/M
Scaffold IDGa0272428_1002112 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40163
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (62.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.57Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050384Metagenome / Metatranscriptome145Y
F074638Metagenome / Metatranscriptome119Y
F098964Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0272428_100211210F098964GGAGGMTIVRLHRHAPEAQSATTCALCGTADVQAVTDHIQVGTPGTPQQDAGVCDACGRVLDNMVDKFGGDLTVMVEEAQQQASEREITVPGVQPNNRTTSE
Ga0272428_100211215F074638AGGAGGMGATPADTEREITRLRGDMSAAIEEIERRVRGGLRGMASADARLTSARARVDVVDRARVDVVDRARVDVVERARDNPTLLGVGGVVAAGALAYGAYALVNNLRERRKPQNRLKRGVRNVRDELSGRVDRLGEGVDESRRQLGSAWQHGLLLKLDPEDGGYVRVSDAKVEPLKKNAKKRGQSGVIKKFVWAGLLSVFMALGSVVARRVADIAWRAMLREEPPTEKTKVKA
Ga0272428_100211223F050384N/AMLAFVKCHVTSAAKWEILRILASNDGAWLQADQLARSSHRQPASLSQALAELAADGVLEMQAAAAPAEARYRLPADEPTSVVLHRLIESATHSLELRAIIAAHLQHVR
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