NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272428_1002938

Scaffold Ga0272428_1002938


Overview

Basic Information
Taxon OID3300031520 Open in IMG/M
Scaffold IDGa0272428_1002938 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32277
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.57Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039053Metagenome / Metatranscriptome164Y
F040020Metagenome / Metatranscriptome162Y
F063039Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0272428_100293815F063039GGAMLLGADDSWGATLATGRLGIYMLASCALLVHMLDLATGLRMMQLYGIELEQNPLARLIMHNAGPIGLIAMKLGVVMAGLLLLVQTASVGRPRLARNCLLVAVGIGILGWSSNLVG
Ga0272428_100293824F040020N/AMSPEARTSQRWLSGFGALDWQTDERAYAALLDALTRDRLEVEGVEREMQATARRNLGDVQADQQRTERSELAEARRELDDFRAAMADVRQRGNADAVTEVPYDSRDPAQNAAADVLIQYLVRPGYAEVRTEEPQPEQYVYYIMVAWPRLRALAEAQRHPLPF
Ga0272428_100293825F039053GGAMLSDVMQQKGLLIGVGVAFGLILLFLRRRPAPEAKAARRLVRNWRNVDDADAARDLLGSNLPTIVRPALLIALHEIERQVHRGFQSLGREIERL
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