Basic Information | |
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Taxon OID | 3300031520 Open in IMG/M |
Scaffold ID | Ga0272428_1005814 Open in IMG/M |
Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 19181 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (65.22%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Victoria Land | |||||||
Coordinates | Lat. (o) | -77.9 | Long. (o) | 161.57 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F035899 | Metagenome / Metatranscriptome | 171 | Y |
F062615 | Metagenome / Metatranscriptome | 130 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0272428_100581415 | F062615 | GAGG | VSDLCTGAAARDAVRERILAWLADGAREISWALCSFPRQHWTDAPPTGPSTWPALRHARHLALRETYLTLPTVRHALGDEDDDDELPSPAELEHADAAWDADAAIDAAEAIVRGLGETRFELLQRLEAAPDDAWERPLPLAVAPDPSGSPIQLDWLMLHARQHELEHVSAIWGVALYWRQASPAVVYGRSPDQAAAGLAPIPSRQT |
Ga0272428_10058144 | F035899 | GAG | MVYPRACPSCRQNEPAPEQLFSTRAALDGGTPSPWRPEQPGRILDLRCGVCWALFRWDYFGSRLIEIVKEGDPDSLGESVPKIET |
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