Scaffold Ga0302320_10025162

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0302320_10025162

Scaffold Ga0302320_10025162

Overview

Basic Information
Taxon OID	3300031524 Open in IMG/M
Scaffold ID	Ga0302320_10025162 Open in IMG/M
Source Dataset Name	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11585
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (94.12%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0477	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044277	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302320_100251622	F044277	AGG	VQNLIFHISLPKGIKLVNGATLMKDVTFDFISQITPYYSTIDMVRLAAGPTLKKISDITIACQIYRSSNEADLITAARIPLSGLQHTRLIGSRLQYTTALASRDLMLNVVSLLGPGAHVLANFSVDRKADNKQRLAEFEESLKLYEVVLRSGGRVMPGGRPDFHFAAKGVLDWAERTPARTWFANGMGANASSMDPGSPTGGRGKPIKFFASPTCSPPMSSMRIGVYQPGFPVSQFYPYAMGQ

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.