Basic Information | |
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Taxon OID | 3300031524 Open in IMG/M |
Scaffold ID | Ga0302320_10032330 Open in IMG/M |
Source Dataset Name | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9895 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden |
Source Dataset Sampling Location | ||||||||
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Location Name | Sweden: Abisko, Stordalen Mire | |||||||
Coordinates | Lat. (o) | 68.3532 | Long. (o) | 19.0477 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F059815 | Metagenome | 133 | N |
F068740 | Metagenome | 124 | N |
Protein ID | Family | RBS | Sequence |
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Ga0302320_100323302 | F059815 | AGAAGG | MLKRALWIALGVVAAATYSSWACAQSEIKTHIIDEQVVEKLATSLNHTSMIEFPESVTAAVVGTEGVRMEFRDNVVILEPDRAGVQTNLLVWTASQQLVYEVQPASETSEWPFVIRESFAPSPLPPPGPTLAEAMALRDSSHGAFLLSMRNITVCSDTKKGKGVHMWAEQVGEDHFSYYVRMTAVNKTKHLYRITTPDVNHIIPAFGAKIALSSVNQQLTPKQVSKIKLYDSEDVASHGSTLTSRDLEPKESVSWVMAVSKVGHPVAIYQFTLPPDGKKQVQAAVIF |
Ga0302320_100323303 | F068740 | N/A | VYQPADRAAILKLVEESYSKGCPTFVYEIKGKCEDPLEPLDDKGKYRLHPLIWTAILGVVGVIGVILYFHFES |
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