NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302320_10032330

Scaffold Ga0302320_10032330


Overview

Basic Information
Taxon OID3300031524 Open in IMG/M
Scaffold IDGa0302320_10032330 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9895
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059815Metagenome133N
F068740Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0302320_100323302F059815AGAAGGMLKRALWIALGVVAAATYSSWACAQSEIKTHIIDEQVVEKLATSLNHTSMIEFPESVTAAVVGTEGVRMEFRDNVVILEPDRAGVQTNLLVWTASQQLVYEVQPASETSEWPFVIRESFAPSPLPPPGPTLAEAMALRDSSHGAFLLSMRNITVCSDTKKGKGVHMWAEQVGEDHFSYYVRMTAVNKTKHLYRITTPDVNHIIPAFGAKIALSSVNQQLTPKQVSKIKLYDSEDVASHGSTLTSRDLEPKESVSWVMAVSKVGHPVAIYQFTLPPDGKKQVQAAVIF
Ga0302320_100323303F068740N/AVYQPADRAAILKLVEESYSKGCPTFVYEIKGKCEDPLEPLDDKGKYRLHPLIWTAILGVVGVIGVILYFHFES
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