NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302320_10221706

Scaffold Ga0302320_10221706


Overview

Basic Information
Taxon OID3300031524 Open in IMG/M
Scaffold IDGa0302320_10221706 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2660
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007294Metagenome / Metatranscriptome353Y
F053728Metagenome140Y
F088082Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0302320_102217062F053728GGAGVTILDRIGRMVRLLLLGSGPKSLMTLAKEPRPKSTLPTAQLYVIETDFEITPDSYNNLQAMLDVVREKYGLDFLILEPGFKLKRFDDY
Ga0302320_102217063F088082AGGAMSISEIADALERAPRQGADKDHPGGSRDAVLSDTALNMMARELRLAVADRPDAETFEGRESR
Ga0302320_102217064F007294N/AMALTLAQLQANLDAVNSAIGDPTLRVRFPDNREVTYRTIDELRKAKAEIEEDIREMSGGPGGRVRLAQHKRGDGQTGPAQFDRW
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