NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302320_10226391

Scaffold Ga0302320_10226391


Overview

Basic Information
Taxon OID3300031524 Open in IMG/M
Scaffold IDGa0302320_10226391 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2619
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008143Metagenome / Metatranscriptome338Y
F019446Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0302320_102263913F008143GAGGMKSVGGIHRTRLAASNVHRHLVKEARRTVQKLGWQVPENDMSPTLVGAISLPFSVPDSFETAFGYRGNLRFVQFGYTLGSPQFGYSDGGDDLPSDGSLWSWFLHHPAVAPYLPESRYPTLYGKFPSGTERPPLERIMGGGAELPTCHCLLLDRRDRRAYVSERGQAMILFALMEPDDGDAHNVFVDGMLMSPGSEDYKVARPPGVLDEFRRFLDSRVQAFEGA
Ga0302320_102263914F019446GAGGVLGKERSLNWSRSRSNERQLDLRRCGKTVTDAENQFLENMPGEIREVLRWHADAQSGGQATQSIADFAGRFLGGMYEDGAVLPTNLSASAPEVLALVLLQHRISPRSTGAWLNLGFALRRVALYRTQDPEETNRARLQSAVQAFDRALELDPDNNGKNIRAWTGMSLAYHILDMYEKELECCVRALESDRSDPKLWLLYSFALKSAGREDDALSTMNDAYEAYIRAGKPDELREVFADVQSTTQRPCRQRMTR
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