NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302320_10525016

Scaffold Ga0302320_10525016


Overview

Basic Information
Taxon OID3300031524 Open in IMG/M
Scaffold IDGa0302320_10525016 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1420
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000451Metagenome / Metatranscriptome1124Y
F021252Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0302320_105250163F000451AGGAGMARFQTKVRHARFVYSPYTSDEMLGFGQLLADTIRARIQSGQNIYDQAAAPLKPGRPGRRGYPDLKAARGLKPIRDWTWSGHTLRCLKVLTVNENRAALGFLDEAFPGRTQTASEIAFWNNQREHMWGVSPRDSAVLVAAMTSYRPLVVAVGGTELAGFRQFGAAQFFGALKRAA
Ga0302320_105250164F021252GGCGGMPQAERVILEAEDEVTPVVNKANAGLDSFEKKAESSHGKVIRITDQTRSSIQRLITSLEKQAETYGKSGVDRLIAQRDSLLQRYAKEPQAVDAITRSYERMIETQKKNDAEALLEK
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