NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302320_11464562

Scaffold Ga0302320_11464562


Overview

Basic Information
Taxon OID3300031524 Open in IMG/M
Scaffold IDGa0302320_11464562 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)675
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000335Metagenome / Metatranscriptome1276Y
F027390Metagenome / Metatranscriptome194N

Sequences

Protein IDFamilyRBSSequence
Ga0302320_114645621F000335N/ALPGNLTQPEPNGVLPASLCTAFTALREYAQLQNQYHDGTIQRSQLAQTSRRTFRLTKRLSSSAMAALYAFWTTQMGGTIAFCFYDPFDVPSGAQIGSNYDPAGNNLQGRVTVAFRGNWSQATDVCRSNLALELVEVVA
Ga0302320_114645622F027390N/ATYPTPGGPNTSAGAGGPTYLSLNVDGQGLAPFMTGSYMTPQFVTDQSMAAQNSSYYRTQSAANSLLPGLTVI
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