NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302326_11367785

Scaffold Ga0302326_11367785


Overview

Basic Information
Taxon OID3300031525 Open in IMG/M
Scaffold IDGa0302326_11367785 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)959
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000451Metagenome / Metatranscriptome1124Y
F075570Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0302326_113677851F075570AGGMADQAERVILEAEETPVLESVGRANTALDSFEKKSE
Ga0302326_113677852F000451GAGGMARFQTVIKSARFVYSPYSAAEMQGFGQVLADSIRARIQSGQNIYDQAAAPLKPGLAGRRGYPDYKAARGLRPLRDWTWSGHTLRCLKVLTANENRAAIGFLDEALPGRSQTASQIAFYNNRRERQWGVSQHDREAVLAAFQARPIVMLKAA

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