NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307380_10019665

Scaffold Ga0307380_10019665


Overview

Basic Information
Taxon OID3300031539 Open in IMG/M
Scaffold IDGa0307380_10019665 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8128
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (40.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002867Metagenome / Metatranscriptome524Y
F003805Metagenome / Metatranscriptome467Y
F006109Metagenome381Y
F016805Metagenome / Metatranscriptome244N
F017824Metagenome238N

Sequences

Protein IDFamilyRBSSequence
Ga0307380_1001966510F006109N/AMTRYVVMAGDRWVTAIYGPGKGIAVTSTKEDASSWPNYDRAVVAARAAADCTNSPVAVHSVEEPSY
Ga0307380_100196652F016805N/AVDPFLTPLATAAIIAGVGALWRIDKRASIMDTRVALILEQITALRSDHKERLDDHELRIRTIEQKL
Ga0307380_100196653F002867N/AVTTTVHSTCFEGGYKLEQLENERNEIYYRACKDSICRYAEDEYIARMYLEGMGWDPTQPPLP
Ga0307380_100196657F003805N/AMRPIEHSTESCFHKAATDQWLVDRFNAGDYRGLLEAALILNTLHQLEKTKTSWAIHEAADNLSGLYGLDRDSA
Ga0307380_100196659F017824N/AMNNAVMQWKEDYEKSQRLGEGRSRTSAEKAELFELMIWIGGQGAMRDLIRAESLQQAIEFAKNRYPNCRVDVPPKAAKKPKLARSYTSPSLVEKRRKKAAEGK
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