NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307380_10041619

Scaffold Ga0307380_10041619


Overview

Basic Information
Taxon OID3300031539 Open in IMG/M
Scaffold IDGa0307380_10041619 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5167
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005132Metagenome / Metatranscriptome411Y
F006007Metagenome / Metatranscriptome384Y
F013231Metagenome / Metatranscriptome273Y

Sequences

Protein IDFamilyRBSSequence
Ga0307380_100416191F006007N/ANNKGMYDVLTHASFQYEHKGASAFYVRWNKERTKIIEFKSLDPKGVRAAEPNEKGEVTHYIVRRSFGYGANSVQHNEPRRIKAFNKFDKSGTEAVLYIANPYSGNPYYGVPNYISAFHYIESDFAFGKHIKNSAENGFSPRVLATFIGRNMSAEQKRDEYNKFKESFTGPSADNFIVSWVKKEEDAPKFEPLDVTNLDKTIDVLSRLNDAKILTAHNVTSPTLFGVMVSGKLGGTGNELVTAYQIFRATETLPNREIILDGVNRILSTTGYDAMNLAIVEEPINLESIKGANTTDI
Ga0307380_1004161910F013231N/AMEKTYQTCKLIKNRVDLYLYEMAILFANLGTDSTAEEIKEAYAKESVFIDKIEELDPVKGSSLRTSY
Ga0307380_100416192F005132N/AMVDVIFIDDNYLYQNFPLPKRMDRGSLLALIQLEQFTSIQDLMGTCLYDNIEAKVLAETLDTVEQGLFKLVKYSLAMYSAKAAISILRTATATTKAEEQKQDQYILDTISTTIDSKLAYIDKRITNYILNNAAIKAIATATGCTDDLFNEQDNYQGDVFYPQDGITDTFCEDGGVSYTP
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