NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307380_10099953

Scaffold Ga0307380_10099953


Overview

Basic Information
Taxon OID3300031539 Open in IMG/M
Scaffold IDGa0307380_10099953 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2993
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008128Metagenome / Metatranscriptome338Y
F022401Metagenome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0307380_100999534F008128N/AMETVPVPKLTVSFAVDIELAYNSFGGKTAEEISEALQDELHDLLFELEQVTGVYSNCTSITAND
Ga0307380_100999536F022401N/AMDTTQEPIEAIDAWQRWYKENKVVADFDEPLVTKDSRESMHDTTSAIDSAKAMWMQKAEEHFADTLAEYQYELTGKDFYKAFYKAAYENMEAARKEYERIKELVDMLRYNNPGQD

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