NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307380_10103319

Scaffold Ga0307380_10103319


Overview

Basic Information
Taxon OID3300031539 Open in IMG/M
Scaffold IDGa0307380_10103319 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2931
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011594Metagenome289Y
F037274Metagenome / Metatranscriptome168Y
F094062Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0307380_101033195F094062AGGGGGMEDEIRVIARMDRKKKIRLYHLLLDEGTTFSAWLRGQVDAYIAEKEPKRKRRKGKGA
Ga0307380_101033196F037274GGAMKTYAVYRLGYWNNKLELLGKVVERRKEERKNNAADMLRWAQKIYAASSIDSSIFIVNEGSSEGAIFGGA
Ga0307380_101033197F011594N/AMTYAELENHILLADRMVVSCAPRKAEYGRGYTEGIKIHFNNPQATSPPDHYTIADIARRNGSRDVHAYARGYRDGCKGLKPEYIG
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