NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307380_10282504

Scaffold Ga0307380_10282504


Overview

Basic Information
Taxon OID3300031539 Open in IMG/M
Scaffold IDGa0307380_10282504 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1551
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027829Metagenome193N
F041161Metagenome / Metatranscriptome160N
F079522Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0307380_102825042F041161N/AMMSKQVADSIEFANDFLPARTTCQEIWYILKDNLIYRNDPPGIELLQSFPSLMEDNYWGIPGAGDCDCFTIAALACARARNIPARAVIVGNSSQAPTHIYAQLFDGSKFIDFDLVSSSYGTTKAYKNKQIIKLH
Ga0307380_102825043F027829N/AMAFTNRFEADISPKKTRIDPKAMQQTIDIPIGSNPETGKQYTFRVYIAVSKMQKKLNFAPTILITITFFKYKLHLQSRDVKAIVSAFNKLSSFIDTASPNLENKLSQELLTYDQWEKEYLERKNMGIININREEYKK
Ga0307380_102825045F079522N/AGAAMNQNVGYGKDRQAICPYDVAIWWHLAFNVEKSIFNPTYIPADLVEEIQQLQRRSIIQALPDSDGGRKWLILNYFENGI
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