NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307380_10618944

Scaffold Ga0307380_10618944


Overview

Basic Information
Taxon OID3300031539 Open in IMG/M
Scaffold IDGa0307380_10618944 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)928
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031081Metagenome / Metatranscriptome183N
F077250Metagenome / Metatranscriptome117N
F078659Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0307380_106189441F077250AGGAMNLYFIAFLAALVFLISYKPGSGTLEKWFGVKEGMHHEMMEAPEIMAPVYKVTSRDEINARELDNIFGIQR
Ga0307380_106189442F031081GGAMAKVERSSYPVKKFMVKSPKGETIYFGQAGYGDYDLWSRVDPEYAEKKRYRYTTSHKAIMMKDGSPAWKNPETAEYYAMRGTWDEPRGNPLFKQVVAMRNKSLTKEEKFFITTQKRLRQKSA
Ga0307380_106189443F078659N/AMWYEPDMEYDTRVVDLKQIMMTPSIFRAVKRAGGKVKEKDYEKDPHPAPTPLREDIAKLDFFEGTPVKVKEHGDFYSIIDGRHRVAAMLLKNFKQISVEVVSE
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