NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318516_10004791

Scaffold Ga0318516_10004791


Overview

Basic Information
Taxon OID3300031543 Open in IMG/M
Scaffold IDGa0318516_10004791 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6064
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041498Metagenome / Metatranscriptome160N
F048203Metagenome148Y
F071284Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0318516_100047912F071284N/AMSRLVALLSIPWALAGFVPAPYGSPILFPAGTDVPRPVQELAWRIIETRCTYQRFEREQRTFWAYDTRTTKVDGGVAYSIKILSERQWNKREPPALIEMTIVEDGGLRLTALKSRFVGCA
Ga0318516_100047913F041498AGGLTKPTCPRCVQTIHPNDTISFDANQIVHLDCRRPFELTYEERALLFMFCWEHPVAACRACSQHFRQHEFATDLFHHRTNLCPRCHTDLTVAIREHLFACDLIPTEVRWRAEDARDAARKLIKQSHELSSHADALMQEAESAVVALREAMKRVTWAG
Ga0318516_100047916F048203GAGGVSGADWFLSPGIDRRTLLKGVGSAALGLLATASGSSTLAGTREAPSPSQPRVAQATGAPESPESRETVYVFNVGSRDVTLIDAADRRVRETRPLGASVRWLSNEQTYWDGRRIWTYDFPDNQVQAIAIDPKQVAITRTISGLGKGPGHSLVVLPDKKTAAINVAGDDLIAFLDLEAGQVKSTLKTGAFP
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